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ELISA Kits & Reagents for DNA Hydroxymethylation (5-hmC Quantification)

 

ELISA Kits & Reagents under DNA Hydroxymethylation covers antibody-based plate assays specifically designed to quantify 5-hydroxymethylcytosine in genomic DNA samples, distinct from the 5-methylcytosine and m6A ELISA kits under DNA/RNA Methylation and from the protein-target immunoassay ELISA Kits under Cell Biology. These kits provide a rapid, sequencing-free readout of global 5-hmC levels, particularly useful in tissues such as brain where 5-hmC is abundant enough for reliable antibody-based quantification. Academic and core laboratories measuring 5-hmC levels across multiple samples can benefit from guidance when selecting assay formats and detection strategies for hydroxymethylation analysis.

Explore available 5-hmC ELISA kits and reagents or request a quotation by contacting customerservice@mbpinc.net. Our team can help identify the appropriate assay format for global DNA hydroxymethylation quantification workflows.

ELISA Kits & Reagents

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Cytosine DNA Standard (2 µg)
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USD90.44
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HRP Developer
D5425-4-15
HRP Developer
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Quest 5-hmC™ DNA ELISA Kit
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What are 5-hmC ELISA kits?

 

5-hmC ELISA kits are antibody-based assays formulated specifically to quantify 5-hydroxymethylcytosine, the oxidized derivative of 5-methylcytosine produced by TET family enzymes, in a genomic DNA sample. The assay typically uses denatured single-stranded DNA coated on a plate well, recognized by an anti-5-hmC primary antibody and developed with an HRP-conjugated secondary antibody for a colorimetric readout proportional to the global level of 5-hmC in the sample.

 

What you will find:

 

  • DNA hydroxymethylation ELISA assay kits for 5-hmC levels quantification
  • DNA methylation ELISA kits for comparative gene regulation analysis and measurement of 5-mC 
  • DNA standards for accurate methylation and hydroxymethylation quantification 
  • Control DNA sets and assay controls for experimental accuracy, validation, and reproducibility
  • HRP-based antibodies for the specific detection in ELISA workflows
  • ELISA coating and reaction buffers for enhanced assay performance and setup
  • Signal development reagents for quantitative readout and chemiluminescent or colorimetric detection

 

How to use 5-hmC ELISA kits

 

Confirm 5-hmC is detectable at relevant levels in your cell type or tissue

5-hmC is most abundant in neurons and embryonic stem cells, where it can constitute up to 20% of total modified cytosines in neuronal DNA, while most cultured cell lines have much lower 5-hmC levels that may fall below a plate-based antibody assay's reliable detection limit. Checking published 5-hmC abundance for your specific cell type helps confirm whether ELISA-level detection is appropriate before committing samples to the assay.

Use a set of mixed methylation standards to build a calibration curve

Running defined mixtures of 5-hmC-containing and unmethylated DNA at known ratios generates a standard curve that lets you convert the raw absorbance signal to an actual global hydroxymethylation percentage, since the assay signal alone cannot be interpreted as an absolute level without this calibration.

Confirm your antibody's specificity for 5-hmC versus 5-mC

Anti-5-hmC antibodies used in these kits are selected for specificity to 5-hydroxymethylcytosine rather than 5-methylcytosine, but published cross-reactivity data for the specific antibody in your kit is worth checking, particularly when studying sample types where both marks are present at similar levels.

Plan your experimental design to include appropriate negative and positive controls

Including a negative control (unmethylated DNA, expected to give background-level signal) and a positive control (5-hmC-containing DNA of known level) in every plate confirms the assay is performing as expected and catches plate-to-plate variability before it affects result interpretation.

Understand ELISA gives global level, not locus-specific 5-hmC information

A 5-hmC ELISA measures the average hydroxymethylation level across all DNA in the sample; it does not reveal which specific CpG sites carry 5-hmC, which requires hMeDIP-seq or TAB-seq for regional or base-level resolution respectively.

 

Specifications context

 

Anti-5-hmC antibodies used in ELISA formats are validated specifically for 5-hydroxymethylcytosine and selected for minimal cross-reactivity with 5-methylcytosine, since distinguishing these two modifications is the primary purpose of a dedicated 5-hmC assay rather than a general methylation assay. As of 2026, 5-hmC ELISA kits remain a standard first-pass tool in studies where many samples need to be screened for differences in global hydroxymethylation level before committing a smaller subset to high-resolution sequencing methods.

Contact the expert team at Molecular Biology Products Inc. (MBP) and find reliable ELISA kits and reagents for your lab.

FAQ

The ELISA Kits under DNA/RNA Methylation cover antibody-based global quantification of 5-methylcytosine and N6-methyladenosine alongside 5-hmC, while this category, nested under DNA Hydroxymethylation, specifically addresses 5-hmC-focused ELISA kits and reagents where 5-hmC is the primary mark of interest. The distinction in catalog placement reflects 5-hmC's growing recognition as an independent epigenetic mark with its own dedicated toolset.
5-hmC is most abundant in neurons and embryonic stem cells, where it can constitute up to 20% of total modified cytosines, while most cultured cell lines have much lower 5-hmC levels that may fall below the reliable detection limit of a plate-based antibody assay. If your cell type has low 5-hmC abundance, more sensitive sequencing-based methods like hMeDIP-seq or enzymatic E5hmC-seq may be needed instead of an ELISA-level readout.
A 5-hmC ELISA generates a colorimetric signal that is proportional to the amount of 5-hmC in the sample but cannot be directly interpreted as an absolute hydroxymethylation percentage without a calibration curve. Running a series of mixed standards with known ratios of 5-hmC-containing to unmethylated DNA generates the calibration points needed to convert raw absorbance readings to a meaningful, quantitative hydroxymethylation level.
Anti-5-hmC antibodies used in dedicated 5-hmC ELISA kits are selected and validated specifically for 5-hydroxymethylcytosine, with minimal cross-reactivity to 5-methylcytosine, unlike the anti-5-mC antibodies used in 5-mC ELISA kits that may show some cross-reactivity to 5-hmC in the other direction. Checking the specific antibody's published cross-reactivity data remains good practice, particularly when studying tissues where both marks are present at comparable levels.
A 5-hmC ELISA is the right choice for high-throughput screening of many samples for differences in global 5-hmC level, such as comparing treatment conditions or patient groups, while hMeDIP-seq provides a genome-wide enrichment map of 5-hmC at regional resolution and TAB-seq or enzymatic E5hmC-seq provides single-base-resolution 5-hmC data. ELISA is the fastest and most cost-effective first-pass approach, with high-resolution methods reserved for samples where detailed spatial information is needed.
A minimum set of controls for a 5-hmC ELISA should include an unmethylated DNA negative control, expected to produce background-level signal, and a 5-hmC-containing positive control of known hydroxymethylation level, alongside the standard curve. These controls allow you to confirm the assay is performing as expected on every plate and catch any plate-to-plate variability or background signal issues before interpreting real sample data.
Standard 5-hmC ELISA kits are formulated for genomic DNA, where the antibody is presented with denatured single-stranded DNA coated on the plate, and are not validated for RNA 5-hydroxymethylcytidine, which is a distinct modification studied separately. For RNA hydroxymethylation, a specifically validated RNA 5-hmC assay or sequencing-based approach would be needed rather than adapting a standard DNA 5-hmC ELISA kit.
Yes, MBP offers academic and bulk pricing for anti-5-hmC antibody ELISA kits for global hydroxymethylcytosine quantification, with specialist support for assay format and calibration. Orders ship from MBP's US office in Houston, Texas, with stock available in both USD and CAD.
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